articleCurrent Protocols in BioinformaticsDec 1, 2013GREEN OA

mtDNA Variation and Analysis Using Mitomap and Mitomaster

Children's Hospital of Philadelphia · Centre National de la Recherche Scientifique · +3 more institutions

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Abstract

Abstract The Mitomap database of human mitochondrial DNA (mtDNA) information has been an important compilation of mtDNA variation for researchers, clinicians, and genetic counselors for the past 25 years. The Mitomap protocol shows how users may look up human mitochondrial gene loci, search for public mitochondrial sequences, and browse or search for reported general population nucleotide variants as well as those reported in clinical disease. Within Mitomap is the powerful sequence analysis tool for human mitochondrial DNA, Mitomaster. The Mitomaster protocol gives step‐by‐step instructions showing how to submit sequences to identify nucleotide variants relative to the rCRS, determine the haplogroup, and view…

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Topics & keywords

Keywords
  • Haplogroup
  • Mitochondrial DNA
  • GenBank
  • Genetics
  • Human mitochondrial genetics
  • Biology
  • Human mitochondrial DNA haplogroup
  • Human genome
UN Sustainable Development Goals
  • Life in Land
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