articleThe Journal of Chemical PhysicsApr 11, 2008BRONZE OA

Adaptive biasing force method for scalar and vector free energy calculations

Stanford University · Ames Research Center · +1 more institution

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Abstract

In free energy calculations based on thermodynamic integration, it is necessary to compute the derivatives of the free energy as a function of one (scalar case) or several (vector case) order parameters. We derive in a compact way a general formulation for evaluating these derivatives as the average of a mean force acting on the order parameters, which involves first derivatives with respect to both Cartesian coordinates and time. This is in contrast with the previously derived formulas, which require first and second derivatives of the order parameter with respect to Cartesian coordinates. As illustrated in a concrete example, the main advantage of this new formulation is the simplicity of its use, especially…

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879
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Authors

3

Topics & keywords

Keywords
  • Cartesian coordinate system
  • Scalar (mathematics)
  • Dihedral angle
  • Applied mathematics
  • Thermodynamic integration
  • Computer science
  • Energy (signal processing)
  • Mathematics
UN Sustainable Development Goals
  • Affordable and clean energy
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