Gateways to the FANTOM5 promoter level mammalian expression atlas
RIKEN Center for Integrative Medical Sciences · Lawrence Berkeley National Laboratory · +18 more institutions
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Abstract
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
Citation impact
940
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- 31.77
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Authors
41Topics & keywords
Topics
Keywords
- Biology
- Genome Biology
- Human genetics
- Computational biology
- Evolutionary biology
- Genetics
- Atlas (anatomy)
- Computational genomics
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Funding
- UDU.S. Department of EnergyAwards: -AC02-05CH11231, 05CH11231, AC02-05CH11231, DE-AC02, DE-AC02-05CH11231, DE-AC02-
- JTJohn Templeton Foundation
- ECEuropean CommissionAwards: 305444, FP7/2007-2013, DE-AC02-05CH11231, 2007-2013, FP7/2007, 115191
- MOMinistry of Education, Culture, Sports, Science and TechnologyAward: DE-AC02-05CH11231
- NONederlandse Organisatie voor Wetenschappelijk OnderzoekAward: FP7/2007-2013
- NNNovo Nordisk
- HLH. Lundbeck A/S
- DFDirectorate for Biological Sciences
- OOOffice of ScienceAwards: AC02-05CH11231, -AC02-05CH11231, DE-AC02
- BABiotechnology and Biological Sciences Research CouncilAwards: BB/JO1446X/1, BBS/E/D/20241866, BB/I001107/1, BB/F003722/1, BB/I001107/1, BBS/E/D/20241864
- RRIKEN
- BEBasic Energy SciencesAwards: DE-AC02, AC02-05CH11231, DE-AC02-05CH11231, -AC02-05CH11231