articleGenome BiologyJan 5, 2015HYBRID OA

Gateways to the FANTOM5 promoter level mammalian expression atlas

RIKEN Center for Integrative Medical Sciences · Lawrence Berkeley National Laboratory · +18 more institutions

PubMed
Indexed incrossrefpubmed

Abstract

The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.

Citation impact

940
total citations
FWCI
31.77
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100%
References
71
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Authors

41

Topics & keywords

Keywords
  • Biology
  • Genome Biology
  • Human genetics
  • Computational biology
  • Evolutionary biology
  • Genetics
  • Atlas (anatomy)
  • Computational genomics
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