The UCSC Table Browser data retrieval tool
University of California, Santa Cruz
Abstract
The University of California Santa Cruz (UCSC) Table Browser (http://genome.ucsc.edu/cgi-bin/hgText) provides text-based access to a large collection of genome assemblies and annotation data stored in the Genome Browser Database. A flexible alternative to the graphical-based Genome Browser, this tool offers an enhanced level of query support that includes restrictions based on field values, free-form SQL queries and combined queries on multiple tables. Output can be filtered to restrict the fields and lines returned, and may be organized into one of several formats, including a simple tab- delimited file that can be loaded into a spreadsheet or database as well as advanced formats that may be uploaded into the…
Citation impact
- FWCI
- 8.70
- Percentile
- 100%
- References
- 10
Authors
1Topics & keywords
- Genome browser
- Upload
- Annotation
- Table (database)
- Computer science
- Genome
- Ensembl
- SQL