kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

UNLABELLED: We announce the release of kSNP3.0, a program for SNP identification and phylogenetic analysis without genome alignment or the requirement for reference genomes. kSNP3.0 is a significantly improved version of kSNP v2. AVAILABILITY AND IMPLEMENTATION: kSNP3.0 is implemented as a package of stand-alone executables for Linux and Mac OS X under the open-source BSD license. The executable packages, source code and a full User Guide are freely available at https://sourceforge.net/projects/ksnp/files/ CONTACT: barryghall@gmail.com.

• UD
  U.S. Department of Energy

  Award: AC52-07NA27344
• LL
  Lawrence Livermore National Laboratory

  Awards: DE-AC52-07NA27344, AC52-07NA27344