InterPro: the integrative protein signature database
University Hospital Heidelberg · Wellcome Sanger Institute · +7 more institutions
Abstract
The InterPro database (http://www.ebi.ac.uk/interpro/) integrates together predictive models or 'signatures' representing protein domains, families and functional sites from multiple, diverse source databases: Gene3D, PANTHER, Pfam, PIRSF, PRINTS, ProDom, PROSITE, SMART, SUPERFAMILY and TIGRFAMs. Integration is performed manually and approximately half of the total approximately 58,000 signatures available in the source databases belong to an InterPro entry. Recently, we have started to also display the remaining un-integrated signatures via our web interface. Other developments include the provision of non-signature data, such as structural data, in new XML files on our FTP site, as well as the inclusion of…
Citation impact
- FWCI
- 75.16
- Percentile
- 100%
- References
- 31
Authors
38- SHSarah HunterCorresponding
University Hospital Heidelberg, Wellcome Sanger Institute, Centre National de la Recherche Scientifique, Heidelberg University, University College London, Université Claude Bernard Lyon 1, SIB Swiss Institute of Bioinformatics, Georgetown University, European Bioinformatics Institute
- RARolf Apweiler
Centre National de la Recherche Scientifique, Wellcome Sanger Institute, Georgetown University, University College London, Heidelberg University, Université Claude Bernard Lyon 1, SIB Swiss Institute of Bioinformatics, European Bioinformatics Institute, University Hospital Heidelberg
- TKTeresa K. Attwood
Centre National de la Recherche Scientifique, Heidelberg University, Wellcome Sanger Institute, Université Claude Bernard Lyon 1, Georgetown University, European Bioinformatics Institute, University Hospital Heidelberg, SIB Swiss Institute of Bioinformatics, University College London
- ABAmos Bairoch
Heidelberg University, University College London, University Hospital Heidelberg, Georgetown University, Université Claude Bernard Lyon 1, Wellcome Sanger Institute, SIB Swiss Institute of Bioinformatics, European Bioinformatics Institute, Centre National de la Recherche Scientifique
- ABAlex Bateman
University Hospital Heidelberg, Université Claude Bernard Lyon 1, Georgetown University, European Bioinformatics Institute, Centre National de la Recherche Scientifique, Wellcome Sanger Institute, University College London, SIB Swiss Institute of Bioinformatics, Heidelberg University
Topics & keywords
- UniProt
- XML
- Upload
- Biology
- Database
- User interface
- Interface (matter)
- World Wide Web
- Partnerships for the goals