phangorn: phylogenetic analysis in R
Centre National de la Recherche Scientifique · Sorbonne Université · +1 more institution
Abstract
SUMMARY: phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation. Extending the general ML framework, this package provides the possibility of estimating mixture and partition models. Furthermore, phangorn offers several functions for comparing trees, phylogenetic models or splits, simulating character data and performing congruence analyses. AVAILABILITY: phangorn can be obtained through the CRAN homepage…
Citation impact
- FWCI
- 42.83
- Percentile
- 100%
- References
- 18
Authors
1Topics & keywords
- Phylogenetic tree
- Maximum parsimony
- R package
- Maximum likelihood
- Character (mathematics)
- Computer science
- Congruence (geometry)
- Biology