reviewBMC BiologyOct 27, 2011GOLD OA

Molecular dynamics simulations and drug discovery

University of California, San Diego · Howard Hughes Medical Institute · +1 more institution

PubMed
Indexed incrossrefdoajpubmed

Abstract

This review discusses the many roles atomistic computer simulations of macromolecular (for example, protein) receptors and their associated small-molecule ligands can play in drug discovery, including the identification of cryptic or allosteric binding sites, the enhancement of traditional virtual-screening methodologies, and the direct prediction of small-molecule binding energies. The limitations of current simulation methodologies, including the high computational costs and approximations of molecular forces required, are also discussed. With constant improvements in both computer power and algorithm design, the future of computer-aided drug design is promising; molecular dynamics simulations are likely to…

Citation impact

1,372
total citations
FWCI
43.70
Percentile
100%
References
73
Citations per year

Authors

2

Topics & keywords

Keywords
  • Virtual screening
  • Allosteric regulation
  • Drug discovery
  • Biology
  • Computational biology
  • Molecular dynamics
  • Identification (biology)
  • Small molecule
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