DNAPlotter: circular and linear interactive genome visualization
European Bioinformatics Institute · Wellcome Sanger Institute
Abstract
UNLABELLED: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages. AVAILABILITY: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/
Citation impact
- FWCI
- 7.86
- Percentile
- 100%
- References
- 8
Authors
5- TCTim CarverCorresponding
European Bioinformatics Institute, Wellcome Sanger Institute
- NTNick Thomson
European Bioinformatics Institute, Wellcome Sanger Institute
- AJAlan J. Bleasby
European Bioinformatics Institute, Wellcome Sanger Institute
- MBMatthew Berriman
European Bioinformatics Institute, Wellcome Sanger Institute
- JPJulian Parkhill
European Bioinformatics Institute, Wellcome Sanger Institute
Topics & keywords
- GenBank
- Unix
- Visualization
- Computer science
- Software
- OS X
- Perl
- User interface