Infernal 1.0: inference of RNA alignments

SUMMARY: INFERNAL builds consensus RNA secondary structure profiles called covariance models (CMs), and uses them to search nucleic acid sequence databases for homologous RNAs, or to create new sequence- and structure-based multiple sequence alignments. AVAILABILITY: Source code, documentation and benchmark downloadable from http://infernal.janelia.org. INFERNAL is freely licensed under the GNU GPLv3 and should be portable to any POSIX-compliant operating system, including Linux and Mac OS/X.

• NS
  National Science Foundation
• HH
  Howard Hughes Medical Institute
• NI
  National Institutes of Health

  Awards: HG000045, NIH R01
• NH
  National Human Genome Research Institute

  Award: HG000045