PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
Peking University · State Key Laboratory of Protein and Plant Gene Research
Abstract
With the aim to provide a resource for functional and evolutionary study of plant transcription factors (TFs), we updated the plant TF database PlantTFDB to version 3.0 (http://planttfdb.cbi.pku.edu.cn). After refining the TF classification pipeline, we systematically identified 129 288 TFs from 83 species, of which 67 species have genome sequences, covering main lineages of green plants. Besides the abundant annotation provided in the previous version, we generated more annotations for identified TFs, including expression, regulation, interaction, conserved elements, phenotype information, expert-curated descriptions derived from UniProt, TAIR and NCBI GeneRIF, as well as references to provide clues for…
Citation impact
- FWCI
- 113.85
- Percentile
- 100%
- References
- 42
Authors
5- JJJinpu JinCorresponding
Peking University, State Key Laboratory of Protein and Plant Gene Research
- HZHe Zhang
State Key Laboratory of Protein and Plant Gene Research, Peking University
- LKLei Kong
State Key Laboratory of Protein and Plant Gene Research, Peking University
- GGGe Gao
State Key Laboratory of Protein and Plant Gene Research, Peking University
- JLJingchu Luo
Peking University, State Key Laboratory of Protein and Plant Gene Research
Topics & keywords
- Biology
- UniProt
- Phylogenetic tree
- Transcription factor
- Computational biology
- Genome
- Phylogenetics
- Annotation