ModBase, a database of annotated comparative protein structure models, and associated resources
QB3 · University of California, San Francisco · +2 more institutions
Abstract
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that relies primarily on Modeller for fold assignment, sequence-structure alignment, model building and model assessment (http://salilab.org/modeller/). ModBase currently contains 10,355,444 reliable models for domains in 2,421,920 unique protein sequences. ModBase allows users to update comparative models on demand, and request modeling of additional sequences through an interface to the ModWeb modeling server (http://salilab.org/modweb). ModBase models are available through the ModBase interface as well as the Protein Model Portal…
Citation impact
- FWCI
- 44.14
- Percentile
- 100%
- References
- 167
Authors
17- UPUrsula Pieper
QB3, University of California, San Francisco, Biocom, University of California, Berkeley
- BWBenjamin Webb
QB3, University of California, San Francisco, Biocom, University of California, Berkeley
- DTDavid T. Barkan
QB3, University of California, San Francisco, Biocom, University of California, Berkeley
- DSDina Schneidman‐Duhovny
QB3, University of California, San Francisco, Biocom, University of California, Berkeley
- ASAvner Schlessinger
QB3, University of California, San Francisco, Biocom, University of California, Berkeley
Topics & keywords
- MODELLER
- UniProt
- Protein structure database
- Biology
- Computational biology
- Database
- Protein structure prediction
- Sequence alignment