HyPhy: hypothesis testing using phylogenies

UNLABELLED: The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution. AVAILABILITY: http://www.hyphy.org CONTACT: muse@stat.ncsu.edu SUPPLEMENTARY INFORMATION: HyPhydocumentation and tutorials are available at http://www.hyphy.org.

• CF
  Center for AIDS Research, University of Washington
• NI
  National Institute of Allergy and Infectious Diseases
• DO
  Division of Biological Infrastructure