RDP3: a flexible and fast computer program for analyzing recombination
University of East Anglia · University of Cape Town · +1 more institution
Abstract
Abstract Summary: RDP3 is a new version of the RDP program for characterizing recombination events in DNA-sequence alignments. Among other novelties, this version includes four new recombination analysis methods (3SEQ, VISRD, PHYLRO and LDHAT), new tests for recombination hot-spots, a range of matrix methods for visualizing over-all patterns of recombination within datasets and recombination-aware ancestral sequence reconstruction. Complementary to a high degree of analysis flow automation, RDP3 also has a highly interactive and detailed graphical user interface that enables more focused hands-on cross-checking of results with a wide variety of newly implemented phylogenetic tree construction and matrix-based…
Citation impact
- FWCI
- 73.22
- Percentile
- 100%
- References
- 30
Authors
6- DPDarren P. MartinCorresponding
University of East Anglia, University of Cape Town, Centre for High Performance Computing
- PLPhilippe Lemey
University of East Anglia, University of Cape Town, Centre for High Performance Computing
- MLMartin Lott
University of East Anglia, University of Cape Town, Centre for High Performance Computing
- VMVincent Moulton
University of East Anglia, University of Cape Town, Centre for High Performance Computing
- DPDavid Posada
University of East Anglia, University of Cape Town, Centre for High Performance Computing
Topics & keywords
- Recombination
- Computer science
- Visualization
- Sequence (biology)
- Range (aeronautics)
- Variety (cybernetics)
- Phylogenetic tree
- Tree (set theory)