articleNucleic Acids ResearchDec 1, 2011GOLD OA

The NCBI Taxonomy database

National Institutes of Health · National Center for Biotechnology Information

PubMed
Indexed incrossrefdoajpubmed

Abstract

The NCBI Taxonomy database (http://www.ncbi.nlm.nih.gov/taxonomy) is the standard nomenclature and classification repository for the International Nucleotide Sequence Database Collaboration (INSDC), comprising the GenBank, ENA (EMBL) and DDBJ databases. It includes organism names and taxonomic lineages for each of the sequences represented in the INSDC's nucleotide and protein sequence databases. The taxonomy database is manually curated by a small group of scientists at the NCBI who use the current taxonomic literature to maintain a phylogenetic taxonomy for the source organisms represented in the sequence databases. The taxonomy database is a central organizing hub for many of the resources at the NCBI, and…

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Topics & keywords

Keywords
  • GenBank
  • Taxonomy (biology)
  • Biology
  • Sequence database
  • Database
  • Nomenclature
  • Taxon
  • Phylogenetic tree
UN Sustainable Development Goals
  • Partnerships for the goals
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