VARNA: Interactive drawing and editing of the RNA secondary structure
Université Paris-Sud · Centre National de la Recherche Scientifique · +2 more institutions
Abstract
DESCRIPTION: VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. FEATURES: VARNA implements four drawing algorithms, supports input/output using the classic formats dbn, ct, bpseq and RNAML and exports the drawing as five picture formats, either pixel-based (JPEG, PNG) or vector-based (SVG, EPS and XFIG). It also allows manual modification and structural annotation of the resulting drawing using either an interactive point and click approach, within a web server or through command-line arguments. AVAILABILITY: VARNA is a free software, released under the terms of the GPLv3.0 license and…
Citation impact
- FWCI
- 14.65
- Percentile
- 100%
- References
- 15
Authors
3- KDKévin DartyCorresponding
Université Paris-Sud, Centre National de la Recherche Scientifique, Inserm, Laboratoire de Recherche en Informatique
- ADAlain Denise
Université Paris-Sud, Centre National de la Recherche Scientifique, Inserm, Laboratoire de Recherche en Informatique
- YPYann Ponty
Université Paris-Sud, Centre National de la Recherche Scientifique, Inserm, Laboratoire de Recherche en Informatique
Topics & keywords
- Annotation
- Computer science
- Scalable Vector Graphics
- Software
- Visualization
- License
- Point (geometry)
- Information retrieval