Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
European Bioinformatics Institute · Wellcome Sanger Institute · +1 more institution
Abstract
Expression Atlas (http://www.ebi.ac.uk/gxa) provides information about gene and protein expression in animal and plant samples of different cell types, organism parts, developmental stages, diseases and other conditions. It consists of selected microarray and RNA-sequencing studies from ArrayExpress, which have been manually curated, annotated with ontology terms, checked for high quality and processed using standardised analysis methods. Since the last update, Atlas has grown seven-fold (1572 studies as of August 2015), and incorporates baseline expression profiles of tissues from Human Protein Atlas, GTEx and FANTOM5, and of cancer cell lines from ENCODE, CCLE and Genentech projects. Plant studies constitute…
Citation impact
- FWCI
- 35.32
- Percentile
- 100%
- References
- 35
Authors
24Topics & keywords
- Biology
- Human Protein Atlas
- Gene expression profiling
- Computational biology
- Gene expression
- Gene
- Transcriptome
- Atlas (anatomy)
Funding
- NSNational Science FoundationAward: WT098051
- WTWellcome TrustAward: WT098051
- EMEuropean Molecular Biology Laboratory
- NINational Institutes of HealthAward: U54-HG004028
- BABiotechnology and Biological Sciences Research CouncilAwards: BB/M018458/1, BB/M018458/1, BB/G022755/1
- NHNational Heart, Lung, and Blood Institute
- NHNational Human Genome Research InstituteAward: HG004028
- DODivision of Integrative Organismal Systems
- CFCommon Fund