articleNucleic Acids ResearchDec 17, 2004HYBRID OA

Reactome: a knowledgebase of biological pathways

GJG. Joshi-Tope

Cold Spring Harbor Laboratory

PubMed
Indexed incrossrefdoajpubmed

Abstract

Reactome, located at http://www.reactome.org is a curated, peer-reviewed resource of human biological processes. Given the genetic makeup of an organism, the complete set of possible reactions constitutes its reactome. The basic unit of the Reactome database is a reaction; reactions are then grouped into causal chains to form pathways. The Reactome data model allows us to represent many diverse processes in the human system, including the pathways of intermediary metabolism, regulatory pathways, and signal transduction, and high-level processes, such as the cell cycle. Reactome provides a qualitative framework, on which quantitative data can be superimposed. Tools have been developed to facilitate custom data…

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Authors

1
  • GJ
    G. Joshi-TopeCorresponding

    Cold Spring Harbor Laboratory

Topics & keywords

Keywords
  • Biology
  • Computational biology
  • Visualization
  • Computer science
  • Model organism
  • Annotation
  • Biological pathway
  • Set (abstract data type)
UN Sustainable Development Goals
  • Industry, innovation and infrastructure
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