The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
Austrian Academy of Sciences · CeMM Research Center for Molecular Medicine · +3 more institutions
Abstract
The PRoteomics IDEntifications (PRIDE, http://www.ebi.ac.uk/pride) database at the European Bioinformatics Institute is one of the most prominent data repositories of mass spectrometry (MS)-based proteomics data. Here, we summarize recent developments in the PRIDE database and related tools. First, we provide up-to-date statistics in data content, splitting the figures by groups of organisms and species, including peptide and protein identifications, and post-translational modifications. We then describe the tools that are part of the PRIDE submission pipeline, especially the recently developed PRIDE Converter 2 (new submission tool) and PRIDE Inspector (visualization and analysis tool). We also give an update…
Citation impact
- FWCI
- 126.66
- Percentile
- 100%
- References
- 55
Authors
18- JAJuan Antonio VizcaínoCorresponding
Austrian Academy of Sciences, CeMM Research Center for Molecular Medicine, Wellcome Trust, Centro de Ingeniería Genética y Biotecnología, European Bioinformatics Institute
- RGRichard G. Côté
CeMM Research Center for Molecular Medicine, Austrian Academy of Sciences, Centro de Ingeniería Genética y Biotecnología, Wellcome Trust, European Bioinformatics Institute
- ACAttila Csordás
European Bioinformatics Institute, Austrian Academy of Sciences, CeMM Research Center for Molecular Medicine, Centro de Ingeniería Genética y Biotecnología, Wellcome Trust
- JAJosé A. Dianes
CeMM Research Center for Molecular Medicine, Wellcome Trust, Centro de Ingeniería Genética y Biotecnología, Austrian Academy of Sciences, European Bioinformatics Institute
- AFAntonio Fabregat
European Bioinformatics Institute, Austrian Academy of Sciences, Centro de Ingeniería Genética y Biotecnología, Wellcome Trust, CeMM Research Center for Molecular Medicine
Topics & keywords
- Pride
- Proteomics
- Context (archaeology)
- Biology
- Pipeline (software)
- Data science
- Database
- Computational biology