articleBioinformaticsOct 5, 2010HYBRID OA

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop

University of Toronto

PubMed
Indexed incrossrefdoajpubmed

Abstract

UNLABELLED: The GeneMANIA Cytoscape plugin brings fast gene function prediction capabilities to the desktop. GeneMANIA identifies the most related genes to a query gene set using a guilt-by-association approach. The plugin uses over 800 networks from six organisms and each related gene is traceable to the source network used to make the prediction. Users may add their own interaction networks and expression profile data to complement or override the default data. AVAILABILITY AND IMPLEMENTATION: The GeneMANIA Cytoscape plugin is implemented in Java and is freely available at http://www.genemania.org/plugin/.

Citation impact

656
total citations
FWCI
5.72
Percentile
100%
References
9
Citations per year

Authors

8

Topics & keywords

Keywords
  • Plug-in
  • Computer science
  • Function (biology)
  • Complement (music)
  • Java
  • Set (abstract data type)
  • Gene
  • Programming language
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