ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
Inserm · Université Paris Cité · +4 more institutions
Abstract
Abstract Summary: We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG/BioCarta pathways and creates a functionally organized GO/pathway term network. It can analyze one or compare two lists of genes and comprehensively visualizes functionally grouped terms. A one-click update option allows ClueGO to automatically download the most recent GO/KEGG release at any time. ClueGO provides an intuitive representation of the analysis results and can be optionally used in conjunction with the GOlorize plug-in. Availability: http://www.ici.upmc.fr/cluego/cluegoDownload.shtml Contact:…
Citation impact
- FWCI
- 15.88
- Percentile
- 100%
- References
- 11
Authors
10- GBGabriela Bindea
Inserm, Université Paris Cité, Sorbonne Université, Graz University of Technology, Centre de Recherche des Cordeliers, Assistance Publique – Hôpitaux de Paris
- BMBernhard Mlecnik
Inserm, Université Paris Cité, Sorbonne Université, Graz University of Technology, Centre de Recherche des Cordeliers, Assistance Publique – Hôpitaux de Paris
- HHHubert Hackl
Inserm, Université Paris Cité, Sorbonne Université, Graz University of Technology, Centre de Recherche des Cordeliers, Assistance Publique – Hôpitaux de Paris
- PCPornpimol Charoentong
Inserm, Université Paris Cité, Sorbonne Université, Graz University of Technology, Centre de Recherche des Cordeliers, Assistance Publique – Hôpitaux de Paris
- MTMarie Tosolini
Inserm, Université Paris Cité, Sorbonne Université, Graz University of Technology, Centre de Recherche des Cordeliers, Assistance Publique – Hôpitaux de Paris
Topics & keywords
- DECIPHER
- KEGG
- Plug-in
- Annotation
- Computer science
- Gene ontology
- Ontology
- Gene Annotation