The RCSB Protein Data Bank: redesigned web site and web services
Scripps Research Institute · University of California, San Diego · +2 more institutions
Abstract
The RCSB Protein Data Bank (RCSB PDB) web site (http://www.pdb.org) has been redesigned to increase usability and to cater to a larger and more diverse user base. This article describes key enhancements and new features that fall into the following categories: (i) query and analysis tools for chemical structure searching, query refinement, tabulation and export of query results; (ii) web site customization and new structure alerts; (iii) pair-wise and representative protein structure alignments; (iv) visualization of large assemblies; (v) integration of structural data with the open access literature and binding affinity data; and (vi) web services and web widgets to facilitate integration of PDB data and…
Citation impact
- FWCI
- 37.63
- Percentile
- 100%
- References
- 35
Authors
15- PWPeter W. RoseCorresponding
Scripps Research Institute, University of California, San Diego, Rutgers, The State University of New Jersey, San Diego Supercomputer Center
- BBBojan Beran
Rutgers, The State University of New Jersey, San Diego Supercomputer Center, Scripps Research Institute, University of California, San Diego
- BCBi Chen
Rutgers, The State University of New Jersey, San Diego Supercomputer Center, University of California, San Diego, Scripps Research Institute
- WFWolfgang F. Bluhm
San Diego Supercomputer Center, Rutgers, The State University of New Jersey, University of California, San Diego, Scripps Research Institute
- DDDimitris Dimitropoulos
Scripps Research Institute, San Diego Supercomputer Center, University of California, San Diego, Rutgers, The State University of New Jersey
Topics & keywords
- Protein Data Bank (RCSB PDB)
- Protein Data Bank
- World Wide Web
- Computer science
- Usability
- Database
- Structural bioinformatics
- Information retrieval
Funding
- NSNational Science FoundationAwards: 0829586, 0753335
- UDU.S. Department of Energy
- OOOffice of Science
- UOUniversity of California, San Diego
- NCNational Cancer Institute
- NINational Institute of General Medical Sciences
- NINational Institute of Diabetes and Digestive and Kidney Diseases
- NINational Institute of Neurological Disorders and Stroke
- UNU.S. National Library of Medicine
- DODivision of Biological Infrastructure