articleBioinformaticsApr 25, 2008BRONZE OA

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

Leipzig University

PubMed
Indexed incrossrefdoajpubmed

Abstract

UNLABELLED: False discovery rate (FDR) methodologies are essential in the study of high-dimensional genomic and proteomic data. The R package 'fdrtool' facilitates such analyses by offering a comprehensive set of procedures for FDR estimation. Its distinctive features include: (i) many different types of test statistics are allowed as input data, such as P-values, z-scores, correlations and t-scores; (ii) simultaneously, both local FDR and tail area-based FDR values are estimated for all test statistics and (iii) empirical null models are fit where possible, thereby taking account of potential over- or underdispersion of the theoretical null. In addition, 'fdrtool' provides readily interpretable graphical…

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Authors

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Topics & keywords

Keywords
  • False discovery rate
  • R package
  • Multiple comparisons problem
  • Computer science
  • Null (SQL)
  • Data mining
  • Null hypothesis
  • Set (abstract data type)
UN Sustainable Development Goals
  • Partnerships for the goals
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