articleMolecular Ecology ResourcesFeb 6, 2016BRONZE OA

pophelper : an R package and web app to analyse and visualize population structure

Uppsala University

PubMed
Indexed incrossrefpubmed

Abstract

The pophelper r package and web app are software tools to aid in population structure analyses. They can be used for the analyses and visualization of output generated from population assignment programs such as admixture, structure and tess. Some of the functions include parsing output run files to tabulate data, estimating K using the Evanno method, generating files for clumpp and functionality to create barplots. These functions can be streamlined into standard r analysis workflows. The latest version of the package is available on github (https://github.com/royfrancis/pophelper). An interactive web version of the pophelper package is available which covers the same functionalities as the r package version…

Citation impact

1,313
total citations
FWCI
50.36
Percentile
100%
References
33
Citations per year

Authors

1

Topics & keywords

Keywords
  • Biology
  • R package
  • Population
  • Computational biology
  • World Wide Web
  • Computer science
  • Demography
  • Computational science
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