articleNucleic Acids ResearchApr 13, 2016GOLD OA

deepTools2: a next generation web server for deep-sequencing data analysis

FRFidel RamírezDRDevon RyanBGBjörn GrüningVBVivek BhardwajFKFabian Kilpert

Max Planck Institute of Immunobiology and Epigenetics · University of Freiburg · +1 more institution

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Abstract

We present an update to our Galaxy-based web server for processing and visualizing deeply sequenced data. Its core tool set, deepTools, allows users to perform complete bioinformatic workflows ranging from quality controls and normalizations of aligned reads to integrative analyses, including clustering and visualization approaches. Since we first described our deepTools Galaxy server in 2014, we have implemented new solutions for many requests from the community and our users. Here, we introduce significant enhancements and new tools to further improve data visualization and interpretation. deepTools continue to be open to all users and freely available as a web service at deeptools.ie-freiburg.mpg.de The new…

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Topics & keywords

Topics
Keywords
  • Visualization
  • Suite
  • Web server
  • Workflow
  • Computer science
  • Set (abstract data type)
  • OS X
  • Web service
UN Sustainable Development Goals
  • Industry, innovation and infrastructure
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