articleNucleic Acids ResearchApr 29, 2016GOLD OA

Dali server update

University of Helsinki · Helsinki Institute of Physics

PubMed
Indexed incrossrefdoajpubmed

Abstract

The Dali server (http://ekhidna2.biocenter.helsinki.fi/dali) is a network service for comparing protein structures in 3D. In favourable cases, comparing 3D structures may reveal biologically interesting similarities that are not detectable by comparing sequences. The Dali server has been running in various places for over 20 years and is used routinely by crystallographers on newly solved structures. The latest update of the server provides enhanced analytics for the study of sequence and structure conservation. The server performs three types of structure comparisons: (i) Protein Data Bank (PDB) search compares one query structure against those in the PDB and returns a list of similar structures; (ii)…

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Authors

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Topics & keywords

Keywords
  • Computer science
  • Structural alignment
  • UniProt
  • Sequence alignment
  • Protein Data Bank
  • Sequence (biology)
  • Data structure
  • Set (abstract data type)
UN Sustainable Development Goals
  • Life in Land
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