articleNucleic Acids ResearchMay 3, 2016GOLD OA

PHASTER: a better, faster version of the PHAST phage search tool

University of Alberta · National Institute for Nanotechnology

PubMed
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Abstract

PHASTER (PHAge Search Tool - Enhanced Release) is a significant upgrade to the popular PHAST web server for the rapid identification and annotation of prophage sequences within bacterial genomes and plasmids. Although the steps in the phage identification pipeline in PHASTER remain largely the same as in the original PHAST, numerous software improvements and significant hardware enhancements have now made PHASTER faster, more efficient, more visually appealing and much more user friendly. In particular, PHASTER is now 4.3× faster than PHAST when analyzing a typical bacterial genome. More specifically, software optimizations have made the backend of PHASTER 2.7X faster than PHAST, while the addition of 80 CPUs…

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Authors

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Topics & keywords

Keywords
  • Genome
  • Graphical user interface
  • Biology
  • Software
  • Annotation
  • Visualization
  • GenBank
  • Metagenomics
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