articlemSystemsJan 4, 2017GOLD OA

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

Dalhousie University

PubMed
Indexed incrossrefdoajpubmed

Abstract

As the microbiome field continues to grow, a multitude of researchers are learning how to conduct proper microbiome experiments. We outline here a streamlined and custom approach to processing samples from detailed sequencing library construction to step-by-step bioinformatic standard operating procedures. This allows for rapid and reliable microbiome analysis, allowing researchers to focus more on their experiment design and results. Our sequencing protocols, bioinformatic tutorials, and bundled software are freely available through Microbiome Helper. As the microbiome research field continues to evolve, Microbiome Helper will be updated with new protocols, scripts, and training materials.

Citation impact

708
total citations
FWCI
23.66
Percentile
100%
References
42
Citations per year

Authors

3

Topics & keywords

Keywords
  • Microbiome
  • Workflow
  • Scripting language
  • Metagenomics
  • Computer science
  • Human Microbiome Project
  • Data science
  • Resource (disambiguation)
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Funding