Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
University of California San Diego · University of Colorado Boulder
Indexed incrossrefdoajpubmed
Abstract
Deblur provides a rapid and sensitive means to assess ecological patterns driven by differentiation of closely related taxa. This algorithm provides a solution to the problem of identifying real ecological differences between taxa whose amplicons differ by a single base pair, is applicable in an automated fashion to large-scale sequencing data sets, and can integrate sequencing runs collected over time.
Citation impact
1,958
total citations
- FWCI
- 62.57
- Percentile
- 100%
- References
- 21
Citations per year
Authors
11Topics & keywords
Topics
Keywords
- Amplicon
- Operational taxonomic unit
- Computational biology
- Metagenomics
- Chemistry
- Biology
- Gene
- 16S ribosomal RNA
UN Sustainable Development Goals
- Life in Land
No related works found for this paper.
Funding
- NSNational Science FoundationAwards: 1144086, 1144807, DBI-1565057
- UDU.S. Department of JusticeAwards: 2015-DN-BX-K016, 2014-R2-CX-K411
- APAlfred P. Sloan FoundationAwards: G-2015-13979, G-2015-13933
- NMNational Multiple Sclerosis SocietyAward: 8911sc
- CACrohn's and Colitis Foundation of AmericaAward: 2928138A
- USUnited States - Israel Binational Science FoundationAward: 2010287
- WUWashington University in St. LouisAwards: WU-16-23, WU-15-284
- KRKenneth Rainin FoundationAward: 2015-537
- NINational Institutes of HealthAwards: HHSN261201100105C, P01DK078669-06A1, P30MH062512
- UOUniversity of Colorado Boulder
- UOUniversity of California, San DiegoAward: P30MH062512
- UOUniversity of California, San FranciscoAward: CA 1072-A-7
- LILaureate Institute for Brain Research, University of TulsaAward: 131349
- OOOffice of Naval ResearchAward: N00014-15-1-2809
- CDCongressionally Directed Medical Research ProgramsAward: W81XWH-15-1-0653