articleBioinformaticsJul 18, 2017Closed access

ggseqlogo: a versatile R package for drawing sequence logos

European Bioinformatics Institute · Wellcome Trust

PubMed
Indexed incrossrefdoajpubmed

Abstract

SUMMARY: Sequence logos have become a crucial visualization method for studying underlying sequence patterns in the genome. Despite this, there remains a scarcity of software packages that provide the versatility often required for such visualizations. ggseqlogo is an R package built on the ggplot2 package that aims to address this issue. ggseqlogo offers native illustration of publication-ready DNA, RNA and protein sequence logos in a highly customizable fashion with features including multi-logo plots, qualitative and quantitative colour schemes, annotation of logos and integration with other plots. The package is intuitive to use and seamlessly integrates into R analysis pipelines. AVAILABILITY AND…

Citation impact

1,065
total citations
FWCI
28.03
Percentile
100%
References
7
Citations per year

Authors

1

Topics & keywords

Keywords
  • Computer science
  • Logos Bible Software
  • Annotation
  • Visualization
  • R package
  • Sequence (biology)
  • Software
  • Source code
UN Sustainable Development Goals
  • Life below water
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