PDBsum: Structural summaries of PDB entries
European Bioinformatics Institute · Wellcome Trust · +3 more institutions
Abstract
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structures can be viewed interactively in RasMol, PyMOL, and a JavaScript viewer called 3Dmol.js. Users can upload their own PDB files and obtain a set of password-protected PDBsum analyses for each. The server is freely accessible to all at: http://www.ebi.ac.uk/pdbsum.
Citation impact
- FWCI
- 29.11
- Percentile
- 100%
- References
- 47
Authors
5- RARoman A. LaskowskiCorresponding
European Bioinformatics Institute, Wellcome Trust
- JJJagoda Jabłońska
University of Warsaw
- LPLukáš Pravda
Central European Institute of Technology, Central European Institute of Technology – Masaryk University
- RSRadka Svobodová Vařeková
Central European Institute of Technology, Central European Institute of Technology – Masaryk University
- JMJanet M. Thornton
European Bioinformatics Institute, Wellcome Trust
Topics & keywords
- Protein Data Bank (RCSB PDB)
- Protein Data Bank
- JavaScript
- Computer science
- Upload
- Information retrieval
- Structural bioinformatics
- Web server