DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
Pasteur Hellenic Institute · University of Thessaly · +6 more institutions
Abstract
DIANA-TarBase v8 (http://www.microrna.gr/tarbase) is a reference database devoted to the indexing of experimentally supported microRNA (miRNA) targets. Its eighth version is the first database indexing >1 million entries, corresponding to ∼670 000 unique miRNA-target pairs. The interactions are supported by >33 experimental methodologies, applied to ∼600 cell types/tissues under ∼451 experimental conditions. It integrates information on cell-type specific miRNA-gene regulation, while hundreds of thousands of miRNA-binding locations are reported. TarBase is coming of age, with more than a decade of continuous support in the non-coding RNA field. A new module has been implemented that enables the browsing of…
Citation impact
- FWCI
- 24.43
- Percentile
- 100%
- References
- 30
Authors
13- DKDimitra KaragkouniCorresponding
Pasteur Hellenic Institute, University of Thessaly
- MDMaria D. Paraskevopoulou
University of Thessaly
- SCSerafeim Chatzopoulos
University of Peloponnese, Athena Research and Innovation Center In Information Communication & Knowledge Technologies
- ISIoannis S. Vlachos
University of Thessaly, Harvard University, Brigham and Women's Hospital
- STSpyros Tastsoglou
University of Thessaly, Pasteur Hellenic Institute
Topics & keywords
- Biology
- microRNA
- Robustness (evolution)
- Search engine indexing
- Computational biology
- Ranking (information retrieval)
- Database
- Coding (social sciences)
- Life in Land