articleNucleic Acids ResearchOct 13, 2017GOLD OA

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions

Yonsei University · Korea University

PubMed
Indexed incrossrefdoajpubmed

Abstract

Transcription factors (TFs) are major trans-acting factors in transcriptional regulation. Therefore, elucidating TF-target interactions is a key step toward understanding the regulatory circuitry underlying complex traits such as human diseases. We previously published a reference TF-target interaction database for humans-TRRUST (Transcriptional Regulatory Relationships Unraveled by Sentence-based Text mining)-which was constructed using sentence-based text mining, followed by manual curation. Here, we present TRRUST v2 (www.grnpedia.org/trrust) with a significant improvement from the previous version, including a significantly increased size of the database consisting of 8444 regulatory interactions for 800…

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Authors

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Topics & keywords

Keywords
  • Biology
  • Database
  • Computational biology
  • Transcription factor
  • Transcriptional regulation
  • Prioritization
  • Set (abstract data type)
  • Gene
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