dynesty: a dynamic nested sampling package for estimating Bayesian posteriors and evidences

JSJoshua S Speagle

Center for Astrophysics Harvard & Smithsonian

Indexed inarxivcrossrefdoaj

Abstract

ABSTRACT We present dynesty, a public, open-source, python package to estimate Bayesian posteriors and evidences (marginal likelihoods) using the dynamic nested sampling methods developed by Higson et al. By adaptively allocating samples based on posterior structure, dynamic nested sampling has the benefits of Markov chain Monte Carlo (MCMC) algorithms that focus exclusively on posterior estimation while retaining nested sampling’s ability to estimate evidences and sample from complex, multimodal distributions. We provide an overview of nested sampling, its extension to dynamic nested sampling, the algorithmic challenges involved, and the various approaches taken to solve them in this and previous work. We…

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Authors

1
  • JS
    Joshua S SpeagleCorresponding

    Center for Astrophysics Harvard & Smithsonian

Topics & keywords

Keywords
  • Markov chain Monte Carlo
  • Sampling (signal processing)
  • Python (programming language)
  • Bayesian probability
  • Computer science
  • Gibbs sampling
  • Importance sampling
  • Markov chain
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