NGPhylogeny.fr: new generation phylogenetic services for non-specialists
Centre National de la Recherche Scientifique · Institut Pasteur · +5 more institutions
Abstract
Phylogeny.fr, created in 2008, has been designed to facilitate the execution of phylogenetic workflows, and is nowadays widely used. However, since its development, user needs have evolved, new tools and workflows have been published, and the number of jobs has increased dramatically, thus promoting new practices, which motivated its refactoring. We developed NGPhylogeny.fr to be more flexible in terms of tools and workflows, easily installable, and more scalable. It integrates numerous tools in their latest version (e.g. TNT, FastME, MrBayes, etc.) as well as new ones designed in the last ten years (e.g. PhyML, SMS, FastTree, trimAl, BOOSTER, etc.). These tools cover a large range of usage (sequence…
Citation impact
- FWCI
- 31.10
- Percentile
- 100%
- References
- 34
Authors
7- FLFrédéric LemoineCorresponding
Centre National de la Recherche Scientifique, Institut Pasteur
- DCDamien Correia
Université Paris-Sud, Centre National de la Recherche Scientifique, Institut Pasteur, Université de Montpellier, Université Paris-Saclay, Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier, Laboratoire de Recherche en Informatique
- VLVincent Lefort
Centre National de la Recherche Scientifique, Université de Montpellier, Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier
- ODOlivia Doppelt‐Azeroual
Centre National de la Recherche Scientifique, Institut Pasteur
- FMFabien Mareuil
Centre National de la Recherche Scientifique, Institut Pasteur
Topics & keywords
- Workflow
- Scalability
- Computer science
- Phylogenetic tree
- Inference
- Biology
- Tree (set theory)
- Database
- Industry, innovation and infrastructure