articleBioinformaticsSep 23, 2017HYBRID OA

Phandango: an interactive viewer for bacterial population genomics

JHJames HadfieldNJNicholas J. CroucherRGRichard GoaterKAKhalil AbudahabDMDavid M. Aanensen

Wellcome Sanger Institute · Imperial College London · +1 more institution

PubMed
Indexed incrossrefdoajpubmed

Abstract

SUMMARY: Fully exploiting the wealth of data in current bacterial population genomics datasets requires synthesizing and integrating different types of analysis across millions of base pairs in hundreds or thousands of isolates. Current approaches often use static representations of phylogenetic, epidemiological, statistical and evolutionary analysis results that are difficult to relate to one another. Phandango is an interactive application running in a web browser allowing fast exploration of large-scale population genomics datasets combining the output from multiple genomic analysis methods in an intuitive and interactive manner. AVAILABILITY AND IMPLEMENTATION: Phandango is a web application freely…

Citation impact

657
total citations
FWCI
20.41
Percentile
100%
References
8
Citations per year

Authors

6

Topics & keywords

Topics
Keywords
  • Computer science
  • Population genomics
  • Genomics
  • Source code
  • Population
  • Data science
  • Scale (ratio)
  • World Wide Web
UN Sustainable Development Goals
  • Good health and well-being
No related works found for this paper.

Funding