articleBioinformaticsJul 5, 2017HYBRID OA

VICTOR: genome-based phylogeny and classification of prokaryotic viruses

Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures

PubMed
Indexed incrossrefdoajpubmed

Abstract

MOTIVATION: Bacterial and archaeal viruses are crucial for global biogeochemical cycles and might well be game-changing therapeutic agents in the fight against multi-resistant pathogens. Nevertheless, it is still unclear how to best use genome sequence data for a fast, universal and accurate taxonomic classification of such viruses. RESULTS: We here present a novel in silico framework for phylogeny and classification of prokaryotic viruses, in line with the principles of phylogenetic systematics, and using a large reference dataset of officially classified viruses. The resulting trees revealed a high agreement with the classification. Except for low resolution at the family level, the majority of taxa was well…

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