SqueezeMeta, A Highly Portable, Fully Automatic Metagenomic Analysis Pipeline
Centro Nacional de Biotecnología
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Abstract
The improvement of sequencing technologies has facilitated generalization of metagenomic sequencing, which has become a standard procedure for analyzing the structure and functionality of microbiomes. Bioinformatic analysis of sequencing results poses a challenge because this involves many different complex steps. SqueezeMeta is a fully automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support that enables co-assembly of related metagenomes and retrieval of individual genomes via binning procedures. SqueezeMeta features several unique characteristics: co-assembly procedure or co-assembly of unlimited number of metagenomes via…
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Authors
2Topics & keywords
Topics
Keywords
- Metagenomics
- Computer science
- Pipeline (software)
- Contig
- Data mining
- Software
- Sequence assembly
- Consistency (knowledge bases)
UN Sustainable Development Goals
- Industry, innovation and infrastructure
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