karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data

MOTIVATION: Data visualization is a crucial tool for data exploration, analysis and interpretation. For the visualization of genomic data there lacks a tool to create customizable non-circular plots of whole genomes from any species. RESULTS: We have developed karyoploteR, an R/Bioconductor package to create linear chromosomal representations of any genome with genomic annotations and experimental data plotted along them. Plot creation process is inspired in R base graphics, with a main function creating karyoplots with no data and multiple additional functions, including custom functions written by the end-user, adding data and other graphical elements. This approach allows the creation of highly customizable…

• GD
  Generalitat de Catalunya
• MD
  Ministerio de Ciencia e Innovación
• ID
  Instituto de Salud Carlos III

  Awards: PI11/, PI11/1609, RTICC RD12/0036/008