preprintarXiv (Cornell University)Oct 30, 2019GREEN OA

GetDist: a Python package for analysing Monte Carlo samples

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Abstract

Monte Carlo techniques, including MCMC and other methods, are widely used in Bayesian inference to generate sets of samples from a parameter space of interest. The Python GetDist package provides tools for analysing these samples and calculating marginalized one- and two-dimensional densities using Kernel Density Estimation (KDE). Many Monte Carlo methods produce correlated and/or weighted samples, for example produced by MCMC, nested, or importance sampling, and there can be hard boundary priors. GetDist's baseline method consists of applying a linear boundary kernel, and then using multiplicative bias correction. The smoothing bandwidth is selected automatically following Botev et al., based on a mixture of…

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Topics & keywords

Keywords
  • Markov chain Monte Carlo
  • Python (programming language)
  • Monte Carlo method
  • Computer science
  • Algorithm
  • Smoothing
  • Gaussian
  • Mathematics
UN Sustainable Development Goals
  • Reduced inequalities
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