articleNucleic Acids ResearchOct 21, 2019GOLD OA

PlantRegMap: charting functional regulatory maps in plants

Peking University · Center for Life Sciences · +1 more institution

PubMed
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Abstract

With the goal of charting plant transcriptional regulatory maps (i.e. transcription factors (TFs), cis-elements and interactions between them), we have upgraded the TF-centred database PlantTFDB (http://planttfdb.cbi.pku.edu.cn/) to a plant regulatory data and analysis platform PlantRegMap (http://plantregmap.cbi.pku.edu.cn/) over the past three years. In this version, we updated the annotations for the previously collected TFs and set up a new section, 'extended TF repertoires' (TFext), to allow users prompt access to the TF repertoires of newly sequenced species. In addition to our regular TF updates, we are dedicated to updating the data on cis-elements and functional interactions between TFs and…

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Authors

5

Topics & keywords

Keywords
  • Biology
  • Regulatory sequence
  • Computational biology
  • Genome
  • Transcription factor
  • Cis-regulatory module
  • Set (abstract data type)
  • DNA binding site
UN Sustainable Development Goals
  • Life in Land
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