articleNucleic Acids ResearchOct 23, 2019GOLD OA

MGnify: the microbiome analysis resource in 2020

European Bioinformatics Institute · Wellcome Sanger Institute · +2 more institutions

PubMed
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Abstract

MGnify (http://www.ebi.ac.uk/metagenomics) provides a free to use platform for the assembly, analysis and archiving of microbiome data derived from sequencing microbial populations that are present in particular environments. Over the past 2 years, MGnify (formerly EBI Metagenomics) has more than doubled the number of publicly available analysed datasets held within the resource. Recently, an updated approach to data analysis has been unveiled (version 5.0), replacing the previous single pipeline with multiple analysis pipelines that are tailored according to the input data, and that are formally described using the Common Workflow Language, enabling greater provenance, reusability, and reproducibility.…

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Authors

17

Topics & keywords

Keywords
  • Metagenomics
  • Contig
  • Biology
  • Workflow
  • Computational biology
  • Pipeline (software)
  • Microbiome
  • Sequence assembly
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