pyGenomeTracks: reproducible plots for multivariate genomic datasets
École Polytechnique Fédérale de Lausanne · Max Planck Institute of Immunobiology and Epigenetics · +1 more institution
Abstract
MOTIVATION: Generating publication ready plots to display multiple genomic tracks can pose a serious challenge. Making desirable and accurate figures requires considerable effort. This is usually done by hand or using a vector graphic software. RESULTS: pyGenomeTracks (PGT) is a modular plotting tool that easily combines multiple tracks. It enables a reproducible and standardized generation of highly customizable and publication ready images. AVAILABILITY AND IMPLEMENTATION: PGT is available through a graphical interface on https://usegalaxy.eu and through the command line. It is provided on conda via the bioconda channel, on pip and it is openly developed on github:…
Citation impact
- FWCI
- 21.25
- Percentile
- 100%
- References
- 10
Authors
8Topics & keywords
- Computer science
- Modular design
- Graphical user interface
- Software
- Interface (matter)
- Multivariate statistics
- Source code
- Line (geometry)
Funding
- DFDeutsche ForschungsgemeinschaftAwards: 390939984, 192904750, SFB 992, EXC-2189-Project ID 390939984, CIBSS-EXC-2189, EXC-2189, ID 390939984
- ÉPÉcole Polytechnique Fédérale de Lausanne
- BFBundesministerium für Bildung und ForschungAwards: 031 A538A, EXC-2189, 031 L0101C, 390939984
- GNGerman Network for Bioinformatics Infrastructure
- HEH2020 European Research Council