ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data

ChIP-Atlas (https://chip-atlas.org) is a web service providing both GUI- and API-based data-mining tools to reveal the architecture of the transcription regulatory landscape. ChIP-Atlas is powered by comprehensively integrating all data sets from high-throughput ChIP-seq and DNase-seq, a method for profiling chromatin regions accessible to DNase. In this update, we further collected all the ATAC-seq and whole-genome bisulfite-seq data for six model organisms (human, mouse, rat, fruit fly, nematode, and budding yeast) with the latest genome assemblies. These together with ChIP-seq data can be visualized with the Peak Browser tool and a genome browser to explore the epigenomic landscape of a query genomic locus,…

• JA
  Japan Agency for Medical Research and Development

  Award: JP20gm5010003
• MO
  Ministry of Education, Culture, Sports, Science and Technology
• KU
  Kyoto University
• JS
  Japan Society for the Promotion of Science

  Awards: 18KT0024, 19H03424, JPMJSP2110, 16H06530
• JS
  Japan Science and Technology Agency

  Awards: JPMJER2101, JPMJSP2110
• IO
  Institute of Genetics
• NB
  National Bioscience Database Center
• PR
  Precursory Research for Embryonic Science and Technology

  Award: JPMJPR1942
• ER
  Exploratory Research for Advanced Technology

  Award: JPMJER2101