TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
Institut Pasteur · Université Paris Cité · +9 more institutions
Abstract
TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments. TrackMate 7 combines the benefits of machine and deep learning-based image segmentation with accurate object tracking to enable improved 2D and 3D tracking of diverse objects in biological research.
Citation impact
- FWCI
- 278.48
- Percentile
- 100%
- References
- 49
Authors
13- DEDmitry ErshovCorresponding
Institut Pasteur, Université Paris Cité
- MPMinh-Son Phan
Institut Pasteur, Université Paris Cité
- JWJoanna W. Pylvänäinen
Åbo Akademi University, University of Turku, Turku Centre for Computer Science
- SRStéphane Rigaud
Institut Pasteur, Université Paris Cité
- LLLaure Le Blanc
Inserm, Institut Pasteur, Université Paris Cité, Pathogenèse des infections vasculaires
Topics & keywords
- Segmentation
- Pipeline transport
- Computer science
- Tracking (education)
- State (computer science)
- Algorithm
- Pipeline (software)
- Artificial intelligence
- Industry, innovation and infrastructure