articleNucleic Acids ResearchNov 12, 2022GOLD OA

The ProteomeXchange consortium at 10 years: 2023 update

EWEric W. DeutschNBNuno BandeiraYPYasset Pérez‐RiverolVSVagisha SharmaJCJeremy Carver

Institute for Systems Biology · University of California San Diego · +11 more institutions

PubMed
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Abstract

Mass spectrometry (MS) is by far the most used experimental approach in high-throughput proteomics. The ProteomeXchange (PX) consortium of proteomics resources (http://www.proteomexchange.org) was originally set up to standardize data submission and dissemination of public MS proteomics data. It is now 10 years since the initial data workflow was implemented. In this manuscript, we describe the main developments in PX since the previous update manuscript in Nucleic Acids Research was published in 2020. The six members of the Consortium are PRIDE, PeptideAtlas (including PASSEL), MassIVE, jPOST, iProX and Panorama Public. We report the current data submission statistics, showcasing that the number of datasets…

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