articleBioinformaticsDec 16, 2022HYBRID OA

YaHS: yet another Hi-C scaffolding tool

CZChenxi ZhouSMShane McCarthyRDRichard Durbin

University of Cambridge · Wellcome Sanger Institute

PubMed
Indexed incrossrefdoajpubmed

Abstract

SUMMARY: We present YaHS, a user-friendly command-line tool for the construction of chromosome-scale scaffolds from Hi-C data. It can be run with a single-line command, requires minimal input from users (an assembly file and an alignment file) which is compatible with similar tools and provides assembly results in multiple formats, thereby enabling rapid, robust and scalable construction of high-quality genome assemblies with high accuracy and contiguity. AVAILABILITY AND IMPLEMENTATION: YaHS is implemented in C and licensed under the MIT License. The source code, documentation and tutorial are available at https://github.com/sanger-tol/yahs. SUPPLEMENTARY INFORMATION: Supplementary data are available at…

Citation impact

2,216
total citations
FWCI
163.11
Percentile
100%
References
19
Citations per year

Authors

3

Topics & keywords

Topics
Keywords
  • Computer science
  • MIT License
  • Scalability
  • Documentation
  • Source code
  • License
  • Code (set theory)
  • Codebase
No related works found for this paper.

Funding