Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
Memorial Sloan Kettering Cancer Center · Dutch Cancer Society · +19 more institutions
Abstract
International cancer registries make real-world genomic and clinical data available, but their joint analysis remains a challenge. AACR Project GENIE, an international cancer registry collecting data from 19 cancer centers, makes data from >130,000 patients publicly available through the cBioPortal for Cancer Genomics (https://genie.cbioportal.org). For 25,000 patients, additional real-world longitudinal clinical data, including treatment and outcome data, are being collected by the AACR Project GENIE Biopharma Collaborative using the PRISSMM data curation model. Several thousand of these cases are now also available in cBioPortal. We have significantly enhanced the functionalities of cBioPortal to support the…
Citation impact
- FWCI
- 192.75
- Percentile
- 100%
- References
- 21
Authors
72- IDIno de BruijnCorresponding
Memorial Sloan Kettering Cancer Center, Dutch Cancer Society, Kettering University, Oncode Institute
- RKRitika Kundra
Memorial Sloan Kettering Cancer Center, Kettering University
- BMBrooke Mastrogiacomo
Memorial Sloan Kettering Cancer Center, Kettering University
- TNThinh Ngoc Tran
Memorial Sloan Kettering Cancer Center, Kettering University
- LSLuke Sikina
Dana-Farber Cancer Institute
Topics & keywords
- Cancer
- Medicine
- Genomics
- Visualization
- Data science
- Bioinformatics
- Computer science
- Data mining
- Partnerships for the goals
Funding
- AAAmerican Association for Cancer Research
- PCProstate Cancer FoundationAward: P30 CA008748
- BCBreast Cancer Research FoundationAward: P30 CA008748
- ACAdenoid Cystic Carcinoma Research Foundation
- MSMemorial Sloan-Kettering Cancer CenterAward: CA008748
- BABen and Catherine Ivy Foundation
- CFCholangiocarcinoma Foundation
- RFRobertson Foundation
- PIParker Institute for Cancer Immunotherapy
- ITInstituto Tecnológico de Costa Rica
- SUStand Up To Cancer
- NCNational Cancer InstituteAwards: CA008748, P30 CA008748, U24CA143840, CA264028, CA143840, CA274633, CA233243
- NCNational Center for Research ResourcesAwards: RR 031228-02, P30 CA008748