preprintbioRxiv (Cold Spring Harbor Laboratory)Sep 7, 2024GREEN OA

Data Release: High-Resolution Imaging and Segmentation of P7 Mouse Tissue Microarchitecture Using FIB-SEM and Machine Learning

Janelia Research Campus

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Abstract

This report presents a comprehensive data release exploring the tissue microarchitecture of P7 aged mice using Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) combined with machine learning-based segmentations of nuclei. The study includes high-resolution 3D volumes and nucleus segmentations for seven vital tissues—pancreas, liver, kidney, heart, thymus, hippocampus, and skin—from a single mouse. The detailed datasets are openly accessible onOpenOrganelle.org, providing a valuable resource for the scientific community to support further research and collaboration.

Citation impact

230
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Authors

20

Topics & keywords

Keywords
  • Microarchitecture
  • Segmentation
  • Computer science
  • High resolution
  • Artificial intelligence
  • Parallel computing
  • Remote sensing
  • Geography
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