GseaVis: An R Package for Enhanced Visualization of Gene Set Enrichment Analysis in Biomedicine

ABSTRACT Gene set enrichment analysis (GSEA) is a widely used computational method for determining whether predefined sets of genes show statistically significant concordant differences between two biological states. Despite its popularity, effective visualization of GSEA results remains challenging particularly for users seeking to extract meaningful insights without extensive programming knowledge. Although several tools are available for visualizing GSEA results, many lack the flexibility and customization options necessary for a comprehensive exploration of the data. For instance, the desktop GSEA software generates basic plots that are not publication ready and offer limited options for editing or…

• NN
  National Natural Science Foundation of China

  Award: 82173053
• NK
  National Key Research and Development Program of China

  Award: 2023YFC2706303